General Analysis

• BCM Search Launcher Sequence Utilities
• NCBI
• ExPASy Bioinformatic Resource
• Softberry molecular biology tools
• Molecular Biology Tools
• Ensemble DNA-RNA analysis

DNA Analysis (Alignment, RE, Oligos, Promoters, etc)

• Multalin DNA Sequence alignment
• Webcutter RE analysis
• IDT oligo analysis
• Primer3 primer design
• Primer Depot
• qRT-PCR Primer Design (Genescript)
• ALGGEN-PROMO (TF binding sites)

CRIPSR Analysis

• gRNA Design (GenScript)
• gRNA Design (Feng Zhang Lab

Protein Analysis

• Phosphosite
• Protein Motifi Analysis
• Protein Phosphorylation Weblinks
• Human Phosphosite KnowledgeBase
• Conversion: protein weight and moles
• PhosphoNetwork

Clinical Sample Database and Analysis

• Oncomine
• COSMIC: catalogue of Somatic Mutation in Cancer
• cBioPortal for Cancer Genomics

Pathway and other Analysis

• Ingenuity pathway analysis